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Single-Cell Genomics Scripts for Script Hub

Unravel cellular heterogeneity with genetic and transcriptome analysis.

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Gene Expression Genetic Analysis Epigenetics Immune Profiling Multi-omics

Gene Expression (9)

Explore single-cell gene expression to reveal key RNA signatures.


  

C1-RamDA-seq
Noncoding RNA

Hayashi, T. et al.
Single-cell Omics Research Unit and Bioinformatics Research Institute, RIKEN Center for Developmental Biology

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Total RNA-Seq
Noncoding RNA

Single-Cell Genomics R&D;
Single-Cell Genomics: Fluidigm Corporation

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SMARTer total RNA-seq
mRNA sequencing

Verboom, K. et al.
Verboom: Center for Medical Genetics Ghent, Ghent University

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Single-cell mRNA-seq with integrated barcoding
mRNA sequencing

Arguel, M-J, Barbry, P et al.
Barbry: UCAGenomiX (IPMC), CNRS, Universite Cote d'Azur

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CEL-Seq2
mRNA sequencing

Hashimshony, T. and Yanai, I.
Yanai: Technion, Israel Institute of Technology

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Full-length mRNA sequencing
mRNA sequencing

Lee, S., Bostick, M. and Farmer, A.
R&D: Clontech® Laboratories, Inc., a Takara Bio USA Company

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C1 CAGE
mRNA sequencing

Kouno, T. Kato, S., Mendez, M., Abugessaisa, I, Shin, J. and Plessy, C.
Division of Genomics Technologies, RIKEN Center for Life Science Technologies

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SMART-seq2
mRNA sequencing

Argoud, K. and Mellado, E.
Oxford Genomics Centre, Wellcome Trust Centre for Human Genetics

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CEL-seq
mRNA sequencing

Hashimshony, T. and Yanai, I.
Yanai: Technion, Israel Institute of Technology

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Genetic Analysis (1)

Discover novel DNA variants in single cells to identify unique populations.


  

Mini-metagenomics
Microbial sequencing

Yu, F.B.
Quake Lab, Stanford University

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Epigenetics (2)

Uncover the epigenetic states of single cells, including chromatin structure and DNA methylation.


  

sc-GEM
Methylation

Cheow, L.F.
Microfluidics Systems Biology Lab, Institute of Molecular and Cell Biology

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ATAC-seq
ATAC-seq

Buenrostro, J., Greenleaf, W. and Change, H.
Greenleaf and Change: Stanford University

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Immune Profiling (1)

 


  

TCR sequence determination by TraCeR
TCR sequencing

Stubbington, M., Lonnberg, T. and Teichmann, S.
Sarah Teichmann: EMBL-EBI and the Wellcome Trust Sanger Institute, Cambridge, UK

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Multi-omics (2)

Start to explore a cell in 360º


  

Concurrent single-cell RNA and targeted DNA sequencing for genomic and transcriptomic signatures
Multi-omics

Kong, S.L., Li, H., Tai, J.A., Courtois, E.T. and Poh, H.M.
Translational Research and Cancer Therapeutics and Stratified Oncology, Genome Institute of Singapore

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Biomodal single-cell omics
Multi-omics

Satpathy, A., Chang, H. et al.
Chang: Stanford School of Medicine, Stanford, CA

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