Products Software

Software

Insight made easy

Get meaningful results from your research with our complete offering of automated, efficient data analysis software. Whether you're evaluating single cells, real-time PCR results or genotyping data, our advanced software programs include standard analysis techniques as well as superior interpretation methods to help you make the most of your work.

ACCESS ARRAY

Access Array AX Controller

The latest software for the Access Array™ IFC Controller AX. To install, follow the instructions in the Updating Software and Scripts section of the IFC Controller AX User Guide (PN 68000157).

FC1 Cycler Software

The latest software for the FC1™ cycler. To install, follow the instructions in the Updating Software and Protocols section of the FC1 Cycler User Guide (PN 100-1279).

BIOMARK HD

BIOMARK AND EP1 DATA COLLECTION SOFTWARE

Latest release of data collection software for the Biomark™ HD and EP1™ systems.  Refer to the instrument user guide for installation instructions.

BIOMARK AND EP1 ANALYSIS SOFTWARE

Software for the Biomark™ HD and EP1™ systems.  Package includes archived data collection software and current analysis software (real-time PCR, genotyping, digital PCR and melt curve).

Biomark Pathogen Detection Software

Software that analyzes qPCR Ct data from Biomark HD to detect and identify mutations. For installation and instructions please reference the Biomark Pathogen Detection Software Quick Reference Guid...

CopyCount-CNV Software

The cloud-based software analyzes raw fluorescence qPCR data from Biomark™ HD to determine absolute quantification and provide DNA copy number results. Applications include transgene copy number, e...

GO Immuno-Oncology Workbench

GO Immuno-Oncology Workbench is designed to further analyze primary data obtained with the Advanta™ IO Gene Expression Assay. GO Immuno-Oncology Workbench enables users to analyze large cohorts, di...

IFC Controllers Software (HX, MX, RX, and WX)

The latest software for IFC Controllers HX, MX, RX and WX. To install, follow the instructions in the Update Software and Scripts section of the relevant IFC Controller User Guide (HX/MX, PN 680001...

Singular Analysis Toolset Software

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-ce...

C1

C1 mRNA Seq HT Demultiplex Script

The C1™ mRNA Sequencing High Throughput Demultiplexer Perl script application programming interface (API) allows automatic demultiplexing of individual single-cell samples from each column using th...

C1 System Software

The C1™ system supports DNA sequencing, mRNA sequencing, targeted gene expression, miRNA analysis and additional applications through the C1 Open App™ IFC (integrated fluidic circuit). Download the...

Script Builder Software

C1™ Script Builder™ allows you to create innovative single-cell applications to deeply explore cellular heterogeneity and the functional attributes of every cell population. Download the latest ver...

Script Hub

Script Hub™ is your central source for C1™ methods and applications. Get access to scripts and other applications developed by Standard BioTools™ and the C1 community, including epigenetics, mRNA s...

Singular Analysis Toolset Software

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-ce...

CyTOF XT

CyTOF Software v9.1

CyTOF® Software v9.1 offers instrument control and data acquisition functionality for both imaging and flow applications with the Hyperion XTi™ Imaging System and CyTOF XT™.

Maxpar Pathsetter

Maxpar® Pathsetter™ is a fully automated reporting and data analysis solution that automatically identifies 37 immune cell types in FCS files from samples processed with the Maxpar® Direct™ Immune...

FCS Express

FCS Express™ is a fully integrated analysis, statistics, graphing and reporting tool for turning cytometry data into presentation-ready and publication-ready results. Full support for Standard BioT...

CyTOF Software v8.0 Activation Key

Activation key request form for customers currently using CyTOF® Software v8.0 and v8.1.

EP1

BIOMARK AND EP1 DATA COLLECTION SOFTWARE

Latest release of data collection software for the Biomark™ HD and EP1™ systems.  Refer to the instrument user guide for installation instructions.

BIOMARK AND EP1 ANALYSIS SOFTWARE

Software for the Biomark™ HD and EP1™ systems.  Package includes archived data collection software and current analysis software (real-time PCR, genotyping, digital PCR and melt curve).

IFC Controllers Software (HX, MX, RX, and WX)

The latest software for IFC Controllers HX, MX, RX and WX. To install, follow the instructions in the Update Software and Scripts section of the relevant IFC Controller User Guide (HX/MX, PN 680001...

HELIOS, a CyTOF SYSTEM

CyTOF Software

CyTOF® Software offers support for the imaging and cell suspension-based sample analysis to Hyperion™ Imaging System and Helios™ system users. The software has the built-in capability to switch sam...

CyTOF Software (Non-acquisition workstations only)

CyTOF® Software offers support for imaging analysis to Hyperion™ Imaging System users.

Maxpar Pathsetter

Maxpar® Pathsetter™ is a fully automated reporting and data analysis solution that automatically identifies 37 immune cell types in FCS files from samples processed with the Maxpar® Direct™ Immune...

FCS Express

FCS Express™ is a fully integrated analysis, statistics, graphing and reporting tool for turning cytometry data into presentation-ready and publication-ready results. Full support for Standard BioT...

HYPERION and Hyperion+ IMAGING SYSTEMs

CyTOF Software

CyTOF® Software offers support for the imaging and cell suspension-based sample analysis to Hyperion™ Imaging System and Helios™ system users. The software has the built-in capability to switch sam...

CyTOF Software (Non-acquisition workstations only)

CyTOF® Software offers support for imaging analysis to Hyperion™ Imaging System users.

histoCAT

The histoCAT™ software is an innovative computational Imaging Mass Cytometry™ analysis toolbox that enables comprehensive analysis of cellular phenotypes and their interrelationships within the spa...

MCD Viewer

MCD™ Viewer is post-acquisition data processing software that allows users to visualize, review, and export Imaging Mass Cytometry™ data acquired with the Hyperion™ Imaging System and CyTOF® Softwa...

Visiopharm Software

As high-plex IMC™ data continues to stretch our abilities to interrogate the tumor microenvironment, finding meaningful differences in your data becomes an ever more data-heavy and daunting challen...

HYPERION XTI IMAGING SYSTEM

CyTOF Software v9.1

CyTOF® Software v9.1 offers instrument control and data acquisition functionality for both imaging and flow applications with the Hyperion XTi™ Imaging System and CyTOF XT™.

MCD SmartViewer v1.0

MCD™ SmartViewer v1.0 is post-acquisition data processing software for visualization, clustering, and spatial analysis of data acquired in Tissue Mode using the Hyperion XTi™ Imaging System and CyT...

MCD Viewer

MCD™ Viewer is post-acquisition data processing software that allows users to visualize, review, and export Imaging Mass Cytometry™ data acquired with the Hyperion™ Imaging System and CyTOF® Softwa...

Visiopharm Software

As high-plex IMC™ data continues to stretch our abilities to interrogate the tumor microenvironment, finding meaningful differences in your data becomes an ever more data-heavy and daunting challen...

ilastik

ilastik is an open source software for image analysis and machine learning. Using machine learning, ilastik software trains custom workflows for accurate cell segmentation and classification.

histoCAT

The histoCAT™ software is an innovative computational Imaging Mass Cytometry™ analysis toolbox that enables comprehensive analysis of cellular phenotypes and their interrelationships within the spa...

JUNO

Advanta RNA-Seq Library Normalization Workbook

This custom Microsoft® Excel® workbook is designed for use with the Advanta™ RNA-Seq NGS Library Prep Kit and Advanta RNA-Seq XT NGS Library Prep Kits with the Juno™ system to automate calculations...

Juno Software

The latest software for the Juno™ system. To install, follow the instructions in the Juno System User Guide (100-7070).

POLARIS

Singular Analysis Toolset Software

An innovative, open-source solution for analyzing and visualizing data, the Singular™ Analysis Toolset offers powerful methods for identifying gene expression and mutation patterns at the single-ce...

Biomark X9 System for High-Throughput Genomics AND BIOMARK X

Standard BioTools X9 Instrument Software

The latest instrument software for the Biomark X9™ and Biomark X™ systems.  Package includes scripts that support use of the Integrated Preamp IFC for TaqMan® genotyping and Express 96 scripts...

Download user guide

Standard BioTools Protocol Editor

The latest version of standalone software that allows you to create, edit and customize thermal protocols and preset files for use with the Biomark X9™ and Biomark X™ systems. Requires system softw...

Download user guide

Standard BioTools Real-time PCR Analysis Software

The latest software for real-time PCR analysis of data generated by Biomark X9 and Biomark X. Package includes the software application installer for Windows® 10 (requires administrator privil...

Download user guide

Standard BioTools SNP Genotyping Analysis Software

The latest software for genotyping analysis of data generated by Biomark X9 and Biomark X. Package includes the software application installer for Windows 10 (requires administrator privileges).

Download user guide

Advanta PGx Assay Preset

Script that contains default analysis settings optimized for the Advanta™ Pharmacogenomics (PGx) Assay.  Requires installation to the instrument software for Biomark X or Biomark X9.

For Research Use Only. Not for use in diagnostic procedures. Patent and License Information: www.standardbio.com/legal/notices. Trademarks: www.standardbio.com/legal/trademarks. Any other trademarks are the sole property of their respective owners. ©2024 Standard BioTools Inc. All rights reserved.