Deep insights with nanoscale genomics.
The only genomic system for real-time PCR and next-generation sequencing library preparation to support discovery through screening.
The Biomark™ X9 System is the only automated, walk-away PCR, qPCR and NGS library prep system on the market, eliminating the need for tedious, hands-on workflows and extra personnel. This versatile microfluidics-based benchtop platform generates data up to two times faster than other technologies – driving speed to insight for critical, time-sensitive data, delivering thousands of nanoliter-scale reactions in a single run and ensuring cost-effective, comprehensive and scalable sample profiling.
Simple workflows for superior efficiency with proven microfluidics technology
Integrated fluidic circuits (IFCs) form the backbone of the Biomark X9 System, supporting:
- different configurations of samples and assays
- simple changes in assays and targets
- multiple applications
Each IFC is precision-manufactured to exacting standards of performance and reliability, empowering genomic research by automating molecular biology in nanoliter volumes.
Use less sample and reagents, lower cost and achieve high-quality consistent results.
IFCs supported on the Biomark System
Flex Six™ IFC
• Genotyping
• Gene expression
One IFC contains six partitions that can be processed together or separately. Each partition enables up to 144 reactions using up to 12 samples and 12 assays.
48.48 IFC
• Genotyping
• Gene expression
• Library preparation
One IFC enables up to 2,304 PCR reactions or 4,800 amplicons (LP) per sample for up to 48 samples.
96.96 IFC
• Genotyping*
• Gene expression
One IFC enables up to 9,216 reactions using up to 96 samples and 96 assays.
* Indicates preamplification
is enabled on specific
configurations of the IFC.
192.24* and 24.192 IFCs
• Genotyping
• Gene expression
• Library preparation
One IFC enables up to 4,608 PCR reactions or 2,400 amplicons (LP) per sample for up to 192 samples.
*Library preparation is only
supported on this IFC format.
Just how much can you do with the new Biomark X9 System?
From 100s of NGS libraries to 1,000s of PCR reactions, here’s the Biomark X9 System by the numbers.
Applications
Key publications showcasing Standard BioTools technologies
GET MORE INFORMATION
See specifications and performance data in the Biomark X9 brochure.
Interested in Standard BioTools microfluidics products? Contact our sales team for product orders, quotes or other inquiries.
Resources
- Biomark X9 System Specification Sheet | FLDM-01020
- Biomark X9 System Site Requirements Guide | FLDM-01039
- Biomark X9 System Gene Expression and Genotyping User Guide | FLDM-01040
- Biomark X9 System Gene Expression and Genotyping Quick Reference | FLDM-01041
- Biomark X9 System NGS Library Preparation User Guide | FLDM-01080
- Biomark X9 System NGS Library Preparation Quick Reference | FLDM-01081
- Genomic Systems Safety Guide | 101-6810
- Standard BioTools Software Release Notes | FLDM-01079
- Standard BioTools Protocol Editor Software User Guide | FLDM-01073
- Standard BioTools Protocol Editor Software Release Notes | FLDM-01110
- Real-Time PCR Analysis Software User Guide | FLDM-01051
- SNP Genotyping Analysis Software User Guide | FLDM-01052
- Gene Expression Using Delta Gene™ Assays on the Biomark X9 System | FLDM-01082
- Integrating the Biomark X9 System into an Automated Workstream | FLDM-01059
- Accelerated Loading of the Standard BioTools 192.24 Dynamic Array IFC for Genotyping with the ASSIST PLUS Pipetting Robot
- Detection and Subtyping of Viral Pathogens Using Custom qPCR Assays on the Biomark X9 System | LAB-00015
- Detecting and Quantifying Pathogens in an Environmental Setting with Genomic Tools that Scale | LAB-00008
Featured blog posts
48.48 Probe GT IFC Preset for the Biomark X9 System
Probe genotyping script that contains instructions for controlling and processing a 48.48 GT IFC on the Biomark X9 System
48.48 SNP Type GT IFC Preset for the Biomark X9 System
SNP Type™ genotyping script that contains instructions for controlling and processing a 48.48 GT IFC on the Biomark X9 System.
Standard BioTools Biomark X9 System Software
The latest instrument software for the the Biomark X9 System and Biomark X systems. Package includes scripts that support use of the Flex Six IFC. V2.0.1.76 May, 2026
Standard BioTools Protocol Editor
The latest version of standalone software that allows you to create, edit and customize thermal protocols and preset files for use with the Biomark X9 System and Biomark X systems. Requires system software. V1.3 Jan 09, 2026
Standard BioTools Real-Time PCR Analysis Software
The latest software for real-time PCR analysis of data generated by the Biomark X9 System and Biomark X systems. Package includes the software application installer for Windows 10 or 11 (requires Administrator privileges).
Standard BioTools SNP Genotyping Analysis Software
The latest software for genotyping analysis of data generated by the Biomark X9 System and Biomark X systems. Package includes the software application installer for Windows 10 or 11 (requires Administrator privileges).
Advanta PGx Assay Preset
Script that contains default analysis settings optimized for the Advanta™ Pharmacogenomics (PGx) Assay. Requires installation to the instrument software for Biomark X systems or the Biomark X9 System.